NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311327_10155095

Scaffold Ga0311327_10155095


Overview

Basic Information
Taxon OID3300029883 Open in IMG/M
Scaffold IDGa0311327_10155095 Open in IMG/M
Source Dataset NameI_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F096473Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0311327_101550951F096473N/AYIEIGSAAPTQTYLLEASSQASPNTVGATAMLEIDFAQLSYLTVLRVTPFTTFPMILTKVEIQGITTNTRQTVWSGSTPIDQPTALHLDQVMGSNPLVSKVFLTFYQPNYSLKQQTVIPPDALRLNVMSQLQAVLPFNARNVVPPPAAVYTGAQYEFGVADVSGEAWTAVSGVFVSGPNRFVGIPELIRFDAVSTDGISNALITSGYVPPNLINKIPSAQNSSGLVSLARMGESLAMSEDTSGGPVDFYLCFQAFDNTGTVIKQNLTGYLLPTGGSEGCTFSFTYPFINGWSVGPGALSQIDHVDFYIKIVHRSSSAVAQRYMLQVTGQ
Ga0311327_101550952F057830AGAAGMFNSLLLDSNDSVIADRLSRLQDSLRGLTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIKSKPAIVGDLTQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSVGVVSSGNAVNSISNLSSTTVGTSFQWSGASLELLLSFPS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.