NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311327_10201821

Scaffold Ga0311327_10201821


Overview

Basic Information
Taxon OID3300029883 Open in IMG/M
Scaffold IDGa0311327_10201821 Open in IMG/M
Source Dataset NameI_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000586Metagenome / Metatranscriptome1007Y
F044645Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0311327_102018211F044645N/AEDSRKTFLSGLRKQEITLDLEAIKQALNLEKAVEGADLAINRFKLQVI
Ga0311327_102018212F000586N/AMRARARQAIEILKAQLLDTGTVEPLVALYFADHIEQVQFEDPSVLDHFDIRTERSFDYLRTMVGLRTPQAAMITLDVRMGTFENDEREVVAEKTAIFLMLDSPLLTIQVVVPYTRSGGRIAVSKVYYTEMPGDENAAPLPLFKLFPCAPVAVC

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