Scaffold Ga0245329

Basic Information
Taxon OID	3300029885 Open in IMG/M
Scaffold ID	Ga0245329_100176 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35707
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029885 Open in IMG/M

Scaffold ID

Ga0245329_100176 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35707

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106978
Total Scaffold Genes	154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (43.51%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

106978

Total Scaffold Genes

154 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (43.51%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F085718	Metagenome	111	N
F106193	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0245329_10017611	F085718	AGGAG	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRDINGKSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0245329_100176117	F050794	N/A	MAPVGTLYIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAERLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVNMIEARYNRFVWREKINESHRWSNICNNI
Ga0245329_100176120	F077313	N/A	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSAYDDQEKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVENPDVKLDMPELIDSNTLPKINTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGMERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNAQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0245329_100176130	F064725	AGAAG	VIQLAREGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAIVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNAMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV
Ga0245329_100176148	F106193	N/A	VGCNTCREKALRAERERIERSMMNHSSSTVVSDREYASRSTAGCMVMQDPLQTMERDVVSIYRQVRTKGDGVGVSYLNMQKKIREWIKNLPYECPPDEEVQEMRKEILDGRSKHIKP
Ga0245329_100176151	F075481	N/A	MMRLRISLRAVFCLGLSLFLSSCGSRRQVSDTSIDSRLISRIETMIDEAMDRRIVEIKTSDLNADIVITERKFDTGKDVDPATGERPVSSVTDAHIVIGRRDSTVTADSLGVNKTRNDIKDLDNKTNIKSKDVDDRKESRWPIVWIVAGILMILLVLVYILKKTKIL
Ga0245329_10017638	F078005	GAGG	MVKTGDDGFEYGGKVIFYKEDDDNYEILVKNIEMNLMVEANTMASMDDRTFACLMGEVYKQKFTKAVTISEDEDDEDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245329_100176

Overview

Ecosystem & Geography

Associated Families

Sequences