NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0246001_1001187

Scaffold Ga0246001_1001187


Overview

Basic Information
Taxon OID3300029889 Open in IMG/M
Scaffold IDGa0246001_1001187 Open in IMG/M
Source Dataset NamePeat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13984
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat → Peat Microbial Communities From Marcell Experimental Forest Bog In Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.506Long. (o)-93.454Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016695Metagenome / Metatranscriptome245Y
F045493Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0246001_100118713F016695N/AMHYNQIIAVLQEHGFAEGRLIANSKSGYCKRHRSHFVVFNAQVCNLRGRLLKQADLDLTLDGEKLTQAARAAGANFYVLYENDPSPFWKPGSIPMSRVLRDAVWWTRIHREDEDLFLPMNSGPLERKRVRLRCSLGRWQNRPAYSVDLWENPEWESRRNMSGPVVQMLGHPPRGFRPRDENEVFTAEVSKTRGRSVRPPFYHRIGLLAYVWFSHGTAVPAILYDHIRRLDSVRFTWHRDSSAIHLRQAGGVVGLFWPCGIPAPEVVAKARRRLFRRFARSTEAEENHR
Ga0246001_100118714F045493N/AGFKHVVIAEEGALDVGDLKTRVSTPIHVLTLSTAKSVPEGILVNCRRVQRAKRPGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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