NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247028_1003900

Scaffold Ga0247028_1003900


Overview

Basic Information
Taxon OID3300029894 Open in IMG/M
Scaffold IDGa0247028_1003900 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-A1b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7040
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Tasiilaq
CoordinatesLat. (o)65.38Long. (o)-38.53Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083559Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0247028_10039004F083559AGGTGGMGAATLLNFESTPDNITKQEIEPALRRKKVRCMYDCAAMDSLQHHSSIPSLINLRVLPHTVHEFGVEARKAGKSWEAAFNGPIQSWADAGTGEVIYGVTVRLSRIKDPFTRELYSTNILFYLPEEAMHGMHNVYDMARKFPFTRIRGPRTSPPQCPPRAGQLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPQERPAHLELQHLFGGVEFVSGKTNTEDDLFLTELGEDIWVKGIVGNAVEELHVESYKNSVRLPSPFKDKVLIGARSMSETKLLPYFESADPSGLRGYGLRGFVDGLPPAIGPSVWERVNRVGLGSNFIPCPELGGHIGLIHVVLERNNPDHPETHDPVYPDIEEQYEGWVVWLDFNDTGAPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRVGDNLRVGYGWGDRALFQAEFDYQTVVRQLAA
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