Scaffold Ga0247271_104501

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247271_104501

Scaffold Ga0247271_104501

Overview

Basic Information
Taxon OID	3300029903 Open in IMG/M
Scaffold ID	Ga0247271_104501 Open in IMG/M
Source Dataset Name	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2627
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Marcell Experimental Forest, Minnesota, Usa

Source Dataset Sampling Location
Location Name	USA: Minnesota, Marcell Experimental Forest
Coordinates	Lat. (^o)	47.50505	Long. (^o)	-93.48901667	Alt. (m)		Depth (m)	0 to 10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019611	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247271_1045015	F019611	N/A	LPLLREALARAVRANQVRRTLHLELKAAAVRSDLYGRNAVRCERQCEDGSWDLEVELDLSEVAKLLGNPGVTVVETSERTREQRVA

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