NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311361_10012889

Scaffold Ga0311361_10012889


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10012889 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16244
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026629Metagenome197Y
F071739Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0311361_100128891F071739GGAGMGMSAFRKMVSCVLLSMLPGSLLAADSGAAMLYAHGAAWLNGAHVPTSSAIFTGDLVQTRSDSGANINAPGSSITVLGESLVQFEGASLKVEHGGVSVSTSKGVATTAGDVRVAPVSNAWTEFNVTDTDGTVRIAALKGDLTVTDDNGTVTLPQGQQTTRDEQSSDQSDKSTDKDKKKNKKRAAGAAPAAGGGILSSPIAIGIGAAAIGGVTAWVLIKSDNPVSPSQPQ
Ga0311361_1001288911F026629GGCGGVNSMRVLLIDPLDTADAGAWAGQHWDRIVDLGMGGRNTYQRWHDQFQCPVTTLDSLRSGFDDFRRVRDLLDMGCGRLIDEHGLDWWEIMSLLLHGELETLILLQRFAETVGSGDEVYVSRPGLHASLLQGLLPTLVTIFPLRRGAQKGGLGHYVRVSNKLSAPQMIDVFWDKYDAGYQLRGRLARKRPPSTRPVVLLPTAYVNVSRTGIAYANTFPEEDFLLVTTRRSGWLQDRPKNVAAAWLSSYASVRDRSAENASLESRLQSLLDELEGVGEFEILNRLGYLDGFPRRFRRGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLARARGLVNIACHHGALDGRYVFKRSHGDVVWAKGKMEEDYLVRRCGVPQEKVEIGAPALPTNWNGSEQLNRQEFRPYLLFISEAYDVGGGRAEEFYRDLLPPLADLALAMGRKLIVKLHPAESERERAKVLNRILSTEQKFSTRIVSGPLTEDLLAKAWFGITILSTVAMECAVRGIPCFLCKWLEFWPYGYVEQFVRFGVGIGLNDPSEVQKIPQYLQQHPVRADVRENCWQPAAAGRLRELLSSSNKERATTMR
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