NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311361_10175836

Scaffold Ga0311361_10175836


Overview

Basic Information
Taxon OID3300029911 Open in IMG/M
Scaffold IDGa0311361_10175836 Open in IMG/M
Source Dataset NameIII_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2716
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034435Metagenome174Y
F065349Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0311361_101758362F065349N/AMQTKTQRLIDLMRAGDWPRALSLANTFRRLGKHRDTIRLAHECRVHPRFYRGLGRDPEAATAAGIEALRQLYPDRS
Ga0311361_101758365F034435N/AMKYLFASDKKPYTPRKSYEARTGMDKRAAKILAAAKIVKPETIEDDQGNTIRVWKSSESSSYSNADIASTLVNRVAVEPNEMLGTVPPSAIKYCVTKGWLVPNASKTLYSVTLRGAVDLNLPLRFKGGAFHGRKIPFAATPKTPTKG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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