NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311359_10717281

Scaffold Ga0311359_10717281


Overview

Basic Information
Taxon OID3300029914 Open in IMG/M
Scaffold IDGa0311359_10717281 Open in IMG/M
Source Dataset NameIII_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021909Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
Ga0311359_107172811F021909N/ASSVLPEGMDLDMTATSLNSYELGKGRVAMFLTSWLFVIGSLLLLARLASHARMFTQAFVQAVKPSDQTGGSSNVPRASSGRYQVQIDFGKAVMADDARQFHYQWKLIQSQSGLRITKEDKEVLDRKIQAYCKHVVEDPTVAAGDHRLLQWFN
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