NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311358_10131213

Scaffold Ga0311358_10131213


Overview

Basic Information
Taxon OID3300029915 Open in IMG/M
Scaffold IDGa0311358_10131213 Open in IMG/M
Source Dataset NameIII_Bog_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032513Metagenome179N
F060535Metagenome132N
F093111Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0311358_101312131F060535N/AAGRVQISLLHYNQVMPLSINGDTSKGYAFTGGVIEVASNTTSYAIRFLTQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPVQSFLPSRPYLLGYWIPGTVLGPNLIQFDRQGIYNDPNHLPDIVVFDSNQNIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVTVVPTVLTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRATSNPLQEIYHQVFNASGPIAGMTNDPNPPTWNGQTPASGSVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDIGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGTIAAIRYYDPEGNESV
Ga0311358_101312132F032513GAGMAKPFYLIWQEGTTVLEGFDGANWIDGQLTFPIVFPGTTTLPLALSLSSSASVNLTFETLVNVAFYLTGDDAPMVQGEWPYITDAYGNATASVTGGAEISFDNGLTWNRFSNTVGLESAPATWLALPQEAVGSVGIAGQIGAFDTAHMLVRYVIPPSVSLTKVLDIQLQVDCDVV
Ga0311358_101312134F093111AGGVQILGNYQSMLSSSYYQQLVTLLQKAIQAGDFGGGQVFDQAALVALQKQAQNFSTLPQPSAGQVVTDESFNNPFTLLAAQFAALLNESNAFATQMAALLSVLSKDTALVDQLLAEADLQTWASTVASITGATPIMWDFGVGYGPIAPLSLTGIWTDPATSATYPNNPTL
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