NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302143_1046665

Scaffold Ga0302143_1046665


Overview

Basic Information
Taxon OID3300029918 Open in IMG/M
Scaffold IDGa0302143_1046665 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)996
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032513Metagenome179N
F093111Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0302143_10466651F032513N/ALLRSGRERISLMAKPFYLIWQEGTTVLEGYDGANWIDGQLTFPIVFPGVTTTLLALSLSSSASVNLTFETLINVAFYLTGSDAPTVQGEWPYITDAYGNATASVTGGVEISFDNGLTWNRFSNTVGLESTPSTWLPLPQEAVGSVGTAGQIGAFDTAHMLVRYVIPPSVSLTKVLDVQLQVDCDVV
Ga0302143_10466652F093111N/AMQLLGNYQSTLSSSYYQQLVTLLQQAIQAGDFGGGQVFDQAALVALQNQAQNFSTLPQPSAGQVVTDESFNNPFTLLAAQFTALLNESNAFATQMAALLSVLGKDTALVDQLLADADLQTWASTIPAVTGATPIMWDFGVGYG
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