NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311363_11097049

Scaffold Ga0311363_11097049


Overview

Basic Information
Taxon OID3300029922 Open in IMG/M
Scaffold IDGa0311363_11097049 Open in IMG/M
Source Dataset NameIII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)684
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051658Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0311363_110970491F051658N/ASGQGVNIRVWLDEKNALVIRAAFGAPGAAMTTMVDITKVSIVPPPATALVVPAYCASVKPPPTPAQLIADETGDDAGNWVNGIYGPGSKASCSIVLHVVSAKTMAPINRKFQVAIDTTYNQNNPTPPSYTFGVGKDGTSTYSGGGLHEITSQVRNGILRIDNPPTYFNLSVNIPTPNHGAGVGLVYRQCFAPVTNLYYVVKDPADMSKGADFLFAKSGKYAAAH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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