NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119944_1000275

Scaffold Ga0119944_1000275


Overview

Basic Information
Taxon OID3300029930 Open in IMG/M
Scaffold IDGa0119944_1000275 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8871
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056351Metagenome137Y
F061574Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0119944_10002752F056351N/AMKLERIEKKVYALAEKWIGKKHVPSLIRQLNKTFKPYIVCFSSDRFDEKYFKDHNVIVSAHYCNRISDIVPEHIYVQLNFPKKQRKVTLTKEGAQNLAVKIIRAIHHEYRHKHQQRQRPFLLQKEYKPKPKQNKMKAMYYGNPDEIDAHAYETQAEATCGRFNINKLRSAHKIGWKECEAVFMYRLHFRKQDPKVWKRFLKKVYKSNEEIQTISKRARNSK
Ga0119944_10002758F061574GGAMFGFKQYIPFLTEQKAPARGIQHLPHPAESAFNTKKSAVGGALSKLHSVISGRAPITKKIDDKMSFQVIKDEKGKVGVKYKGPGAQYNFSHEDIKKQYANKPYVAGPLMNILNHVHKVLPDRAGEYQGGYLSAPENRTEEDGHIGHQPNTIGYSVPKSSPEGKKLAKSRVSLVIHSELDKAGSASPIEHSEFKDHPDVHLMNHSVSPEERKISPEAKRKALEHIAAAKKLASEHSHDHHEGHDETLNRYANSTIDTGEKPNTKGYAKFLEKYHQKRIDSVKTEKAKNQKTEEMKAAINHVNDNLGKFDRTFDIHHHIQQATYAVADALSKTAHGGYRHHIDGQEAAGEGFVSNGIKLVPRKFTEANRKRSAALKAQRSVI
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