Scaffold Ga0119945_1000200

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119945_1000200

Scaffold Ga0119945_1000200

Overview

Basic Information
Taxon OID	3300029933 Open in IMG/M
Scaffold ID	Ga0119945_1000200 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8640
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location Name	China: Pearl River Delta area
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011293	Metagenome	292	Y
F013882	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119945_100020016	F013882	N/A	EAMRDLQKMEPELAKQIKKDFKDVVKPIVHDARSKIVQLPLSGFARKWKDGKIFPWSQPAVSKSIIARFSNRKRGNSLAVFSVTMKSPAGTIFDMAGRGGANRLAAALDTLYGRPSRLMWPTYERHAAQVNENLQRLTERIVDETNRRLVS
Ga0119945_10002003	F011293	GAGG	MSSNIDPGDAAYRAWQLTKGERQAQYGDPWTDYTMVRRLFSTLTNYHHNLTVQEAILFMVCVKLARLMKSLDIEKLHEDSLVDAIGYLNCLHMADATDQLKDAPRHIVGDMVIDRGF

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