NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119945_1001170

Scaffold Ga0119945_1001170


Overview

Basic Information
Taxon OID3300029933 Open in IMG/M
Scaffold IDGa0119945_1001170 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3967
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment Plant In Pearl River Delta Area, China

Source Dataset Sampling Location
Location NameChina: Pearl River Delta area
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022633Metagenome213N
F036299Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0119945_10011701F022633N/AIGINLGLTIAGFLGSLLLLPRQKNWRMQLIAVLSGTLSATYIAPVLIGVLNIEAPNVEYGLAFIVGFSGVKITEVLEVRILKMLKSEKKEP
Ga0119945_10011704F036299N/ALFLLGCCRKPAEVIRTQAIVHTDRQVVTAGSLTELTLPDLCDSAGVVRRFMLRDSTKTSVLSVQNSGGGIVIRLKRDTVVQRLIMRDTTIVERTVVVQPKKRKSRWPILLLGAVVGLVASIVLFSRLK
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