NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311340_10432246

Scaffold Ga0311340_10432246


Overview

Basic Information
Taxon OID3300029943 Open in IMG/M
Scaffold IDGa0311340_10432246 Open in IMG/M
Source Dataset NameI_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1199
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026389Metagenome / Metatranscriptome198Y
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0311340_104322461F026389N/ASTPVKVVGSSKNHERVEIIIQDVYRKDGRVYVRYAIVNGGRTNYLPAAPDVFALRSPRAKQSLVTLANSQLAGDVQLHWKALAYLPVVHAELQTPVVKPGQTAHGVVAFDLPSQNGEREGRTVLKLAFPADDTAAVSAVLVL
Ga0311340_104322462F029879GGAMPTESELREGLRKRRTIFPDVTVDQPVTLPAVDAEFRAARRNRADIGIANHVLSVFLEPRNPFEPKRARKPKMEAVVFGTLLVLVVIAVLAFNLAAPRPH
Ga0311340_104322463F057229GGAGGMNCKRNRSLDRALREGEMLGLIFTTLILIVVEGCFVYWLHHTRLPDRQFAASGFLVVPTWRRKPLFEVTLLLTIAAGMLFQVCRGLWDVSRERNRTASSEILKSLRQRAKAAASVAALAGLNLALAAWLR
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