NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311330_10139939

Scaffold Ga0311330_10139939


Overview

Basic Information
Taxon OID3300029945 Open in IMG/M
Scaffold IDGa0311330_10139939 Open in IMG/M
Source Dataset NameI_Bog_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2323
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081106Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0311330_101399394F081106N/AQSRLVNFDEIKDENVILLGGSQAWSGRVFLNAQGFQLQSGVIVNRNPQTGEKPVYRPEFDSVTNQLTHDYALVLMLPNEKKEDRVLLIYGIYTQGSQAAIEYLTNPEQMRLLRKALLDQASDHKTIPPYFQALLETTVENSVPGTSTLVALRVIPN
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