NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311371_10132037

Scaffold Ga0311371_10132037


Overview

Basic Information
Taxon OID3300029951 Open in IMG/M
Scaffold IDGa0311371_10132037 Open in IMG/M
Source Dataset NameIII_Palsa_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3879
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0311371_101320371F048424N/AVLPSVHPTLETPGIEINKGVVVAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLWFEDGPETGALIPMQVKPGDVIEFGFRNITLVDFDRVGFPGIGHLAVIWQKAVYSVDPDESLQDCLLWQQSAGYDRKGNYMSGAEDWHRA
Ga0311371_101320372F102028N/AMGQNVPDDEQLGSMAKANTPGAPGTPWGKWPKIKPETVAPLRDGRPDMYNHTPTRFVSKEEAKARGWKHFWTGEICVTGHRAARYVANGSICVDCQRIERGQIPVYGKGVPELEAARRRAYTQKNTVAQPAQPSTAEKRFLEKYAEIKDFALAADACGRTESEFLAILSWNQMFRESVNRLEESLGIARTQKITEEFDWDDDKRKTFLLTYANTADMKEALRSIRATNVQLNKELVDNPDFQRDFDEAAQLARNVFDHAASSSAIKGDSRLLGRIASNLFPEKFGENMKVDLNVKQNLTAAQINAEITQLISGFSRQGILSAPRRDGEDAIDAEYQLVELERVDEVADAPETEEADAGSYPNSDLVSGS
Ga0311371_101320376F082044GAGMSVTLKLVHEEGIRLRQQAAHKIEHTDEKTKAVTTSVDWRFVKRPDSGGKVVEECQQDEDPRRVDANGRKMQLGTYTVHVTAGMNNLVIERKGKVAPFNFKNGAIRNQVRVQYQKLTDSGRKTKDQKPVHEWKSDGPPKYIPANTFDGVFVGDGQRAIVDEMPT
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