NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311343_10318967

Scaffold Ga0311343_10318967


Overview

Basic Information
Taxon OID3300029953 Open in IMG/M
Scaffold IDGa0311343_10318967 Open in IMG/M
Source Dataset NameII_Bog_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1491
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F065360Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0311343_103189671F065360N/ATPFTTFPMILTKVEIQGITTNTRQTVWSGSTPIDQPTALHLDQIMGINPLVSKVFLTFYQPNYSLKQQTVTPPDALRLNVMSQLQAVLPFNARNVVPPPAVVYTGAQYEFGVADVSGEAWTASSGVFVSGPNRFVGIPELIRFDAVSTDGISNATYTGTYVPPNLINKIPSAQNSSGSLAHMMSGESLAMSEDTSGGPVDFYLCFQAFDNTGTVIKQNLTGYLLPTGGSGQCFSFTYPFINGWSIGSGALSQIDHVDFYIKIVHRRSSAVAQHYMLQVTGQ
Ga0311343_103189672F057830AGAAGMFNSLLLDSNDSVIADRLSRLQDSLRELTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISNLSSTAVGTSFQWSGSSLELLLSFPSPTIVNRL
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