NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311331_10299174

Scaffold Ga0311331_10299174


Overview

Basic Information
Taxon OID3300029954 Open in IMG/M
Scaffold IDGa0311331_10299174 Open in IMG/M
Source Dataset NameI_Bog_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1716
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072572Metagenome / Metatranscriptome121N
F092516Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0311331_102991741F092516N/ALATCEKTIGSSFSVFVDGDPASIRQLDTDAKKQTFLEHAPVRPWESRPFQGARVEQ
Ga0311331_102991744F072572AGGAGMASSATKMANEPEGAGEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVGAYLIQWWLTHPGPYPAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCAL

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