Scaffold Ga0302188_10188343

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302188_10188343

Scaffold Ga0302188_10188343

Overview

Basic Information
Taxon OID	3300029986 Open in IMG/M
Scaffold ID	Ga0302188_10188343 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	876
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081649	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302188_101883431	F081649	AGGA	MKKLNALNINGLTITIGLVLGLYSGAAFAQTNLIINGSFESGGAAEGVFQGWDWTGPAGNNSDYGVAQSTIAPDVAQQGDFYTYFHGHPNDGTQDCLGQSVNLTVGAQYNITYYLGTDGTTLNTNAAMWVVIGSSFAIDYSVDTLLTAYYPNSANALPYQKFTTIFTATNANPILSFHGVDPFSSILLDNVSMTLVVPSPQLNVTVSPTSKLVFTWNSSTSGFLLQGNLS

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