NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311334_11248327

Scaffold Ga0311334_11248327


Overview

Basic Information
Taxon OID3300029987 Open in IMG/M
Scaffold IDGa0311334_11248327 Open in IMG/M
Source Dataset NameI_Fen_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051728Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0311334_112483271F051728N/ADGIRSQKLLIALSKVTRRTLRDATQRVVGEGDKVKGAIRKIYNTMLRMPKISLEKWRKYVEGCKHKDFFDNVRSLKVKTCLDKIVIRTTRDTTQRILGGGSKIKGALTSLINGLNNIPKKALRRWAKTVQDIKDKKLYDNARSAKLLNSLEKIQRRTLKETHERVKGLMFASPHVKAIIKRMDGILKRNPK
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