NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311339_10085070

Scaffold Ga0311339_10085070


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10085070 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3988
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042611Metagenome158N
F049116Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0311339_100850701F042611N/AAEKGGLNFQPNPDAPGCNFSRHDNRPIRVVTEMREVKKYPHAEGWILEKWFPASSYGTQAEWYSYKAIDGFTPMLGPYPECGDYEMVFGPWPKAPTTDTLQGLIAQYSFGMNSRRGSAESRAQEYLLRFQYEEEQAEKKRKIEYDAMMRDHISPLHSSSLAASRWRQDLARRTGNANEHIGIL
Ga0311339_100850703F049116AGGVSWTLGQVKARVRNLLDDPQGSYLTDSFVVPLICEVYDDANSQLASTQSSWDIAVVEVPGVPPGTPNLAPYQTGNGPLAALTDQPLRIDWKPAGDDPSYYRLVPNYEVLPDLVPREGMAGWEFRSEVIWLTNCSIAVDLRVRGEFGPPPLTSDDSVLLSHPRIGYVVAYGTAALIATVRGNEAWTQQYEQKALEGMDEIMEQLVRAEQGQVRRAARQTRPRRS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.