NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311339_10227843

Scaffold Ga0311339_10227843


Overview

Basic Information
Taxon OID3300029999 Open in IMG/M
Scaffold IDGa0311339_10227843 Open in IMG/M
Source Dataset NameI_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003692Metagenome / Metatranscriptome473Y
F036847Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0311339_102278431F036847N/AMLGPVLNWLAIARQCFADPCGGLTRGLLTSAFALLVGLERIFHLEQMEDAGFARLTGGRRCPSRYSVGGWRRHLPWYEVDAFCRRTSPWHLIQGDIALVSYDEHTIPRWTHKFNIPKGYVTTRNKHMRCEKLFYSYDLSSGRYLAVRATPGHWGLQDLAVTLTQQTLQRGQPEYLHALFDAGAGQSDAGVRALWDLTQEYDPRLTVTMRACRYPHRVKLWKALPGEQFESFWEPGPYVDAPAKEIRLAETQTVLKGESPEQALRTIICREVVPGPKKDRWHPLFTTAVVTPLEVLTMFRARQYHEQAYRVGVYDEFLDAVPCGYDKDSPDPKRPRFDRGPLQMIGWLVALVYNAVGDWAASLSEDYVDCHIRTLRRQFFNRAGTLYETPEALVVNLERFAGQEALVPVIDEFNAAEHRLPWLENRRVVVA
Ga0311339_102278432F003692GGAGGMLAATDLFSTWLTQAHIHEHRLTPDQRGALLAAFHFRHSRGNDSYTTRLLTHFLLHCGSGLKVAQLARLAGVSRPTASRQQGMSSKQAVQQAHHRSDGRPYGKLLPRYAGPIIEFLLAHPKATRTQLLDFIDRTFGVRVSRIALYKFLKKFGIDRVATTSAAPASAVPNVPSVPTAPTDPVDADPVPARHAGTLATLTSAPAPAPPFSSDTRSMRVPS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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