NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311338_10224806

Scaffold Ga0311338_10224806


Overview

Basic Information
Taxon OID3300030007 Open in IMG/M
Scaffold IDGa0311338_10224806 Open in IMG/M
Source Dataset NameI_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2136
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026389Metagenome / Metatranscriptome198Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0311338_102248061F026389N/AQPKAPTGLLMESTPVKVVGASKNHERVEIIVQDVYRKDGRVYVRYAIVNGGRTNYLPAAPDVFALRSPRAKQSLVTLANSQLAGDVQLHWKALAYLPVVHAELQTPVVKPGQTAHGVVAFDLPSQNGEREGRTVLKLAFPADDTAAVSAVLVL
Ga0311338_102248063F057229GGAGGMNCKRNRSLDRALREGEMLGLIFTTLILIVVEGCFVYWLHHTRLPDRQFAASGFLVVPPWCRKPLFEVTLLLTIAAGMLFQVCRGLWDVSRERNRTASSEILKSLRRRAKAAASVAALAGLNLALAAWLR
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