NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302281_10146687

Scaffold Ga0302281_10146687


Overview

Basic Information
Taxon OID3300030044 Open in IMG/M
Scaffold IDGa0302281_10146687 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086263Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0302281_101466871F086263N/AKDGSVRFPDWYRRWISGNWGYEHPASYYKHCMGPNGEVYTYDELYTQHEQPEDLAEHIAEWAVEENEHGKMEIPQFINFTHSFDAEYSKATATMGADMRSVNQRMTPVLRREGIPIPLPSTRDKLGRDTLMRELLAKRIRYGEDASGHPLEYPGWMVSDKCKQLRRVIPLVKSDPKRVEQIEGSSDGSDSPLQGSGYGLYAIFGRPASKPLQVRQQEYYQSLSPKADMTAKSVLMAKWKQDNNPRKGSAWAARQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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