NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311333_10586956

Scaffold Ga0311333_10586956


Overview

Basic Information
Taxon OID3300030114 Open in IMG/M
Scaffold IDGa0311333_10586956 Open in IMG/M
Source Dataset NameI_Fen_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006399Metagenome / Metatranscriptome374Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0311333_105869561F006399GGGGGMATLALNSEVQSLVTEYGVFWQPWPQFEQTHGERRLVGFEVELIGAHMSDVNHVDLACPSCRHVRSVLLAIADGMHDELIVSRNSLTYSIDSHSNSILCLPALGNRSAVSVSIYVFLNHSNGQSFEGDLLNEVKTLLNRWGIHQR
Ga0311333_105869562F017965AGGAMLEKIGHRDALYLFGCHLEWHTKRNLAAYMELLAALDDPDGDIRHLAESLLQRSSPRPKGTAKRVESREGSTVAGQK
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