NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311353_11358239

Scaffold Ga0311353_11358239


Overview

Basic Information
Taxon OID3300030399 Open in IMG/M
Scaffold IDGa0311353_11358239 Open in IMG/M
Source Dataset NameII_Palsa_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068066Metagenome / Metatranscriptome125Y
F087818Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0311353_113582391F068066N/AMKKVFLVLSSVVFLIGCASDDSNKDKEVNQTPQFGKPDSAIPWNQPTDWEKSGQLGSMPGFDQA
Ga0311353_113582392F087818N/AALTEAGRNLEQKQRAEQDRQALARRLIDVEDELNQFRLTANRSKLKAPVPLEGSILSINQQAKALTVSLGSDSGVATNSRLTVVRNGEKLTQLRVVSAELNSCVAEFASAAPDNLSKVAVGDSVLLATK

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