Scaffold Ga0268240_10003891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268240_10003891

Scaffold Ga0268240_10003891

Overview

Basic Information
Taxon OID	3300030496 Open in IMG/M
Scaffold ID	Ga0268240_10003891 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2120
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Mexico: Penjamo
Coordinates	Lat. (^o)	20.686	Long. (^o)	-101.875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079702	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268240_100038912	F079702	GGGGG	LAMAVLVLFLVGAPGDNGSPQRSKEIYFALAQSVRAQSAPATPIPTCERLLREFESDPRTQQASPEERRFVRAFLQTYVQRLLEEGVPGASRLDPDSNGIACDELQSAGGGQSASTGRASPQPSVEGGSQLLNRYGNLLEAGGPSFGPVPLMPDGGCPREFPTRRYAACYPR

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