NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268240_10017689

Scaffold Ga0268240_10017689


Overview

Basic Information
Taxon OID3300030496 Open in IMG/M
Scaffold IDGa0268240_10017689 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Penjamo
CoordinatesLat. (o)20.686Long. (o)-101.875Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037606Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0268240_100176891F037606N/ARIYARLWAAVLALIAIAAAVRISRVGLGVSVLYLGSAAVFAYAGFSRRTSTIIRSVVAAMGLFFLLSGLLVAFTMSVLWFPFEGRGWELGLVHAAFGGLTMVCAVLLPCSDEAASR

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