NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268240_10184638

Scaffold Ga0268240_10184638


Overview

Basic Information
Taxon OID3300030496 Open in IMG/M
Scaffold IDGa0268240_10184638 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Penjamo
CoordinatesLat. (o)20.686Long. (o)-101.875Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013278Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0268240_101846381F013278AGGAGGMVKVLIEVHDGTARFTVAIKAQSIQQALSIVAARYSGSVARVKFPSEPEGFFVEDSAA
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