NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311370_10470859

Scaffold Ga0311370_10470859


Overview

Basic Information
Taxon OID3300030503 Open in IMG/M
Scaffold IDGa0311370_10470859 Open in IMG/M
Source Dataset NameIII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0311370_104708591F102028N/AMGQNVADDDQLGSLAKAKTPGAPSQPWGKWPKIKPETVAPLRDGRPDMYNHMPTRFVSLAEAKARGWKHFWTGELCVTGHRAARYVANGSICVDCQRVERGQVPVYGKGVPELEEARRRKYTQKDTAPAGPPVPSAGEKNFLAKYAELKDFALAADACGRSESEFLAILSWNTTFRDAVNRLEESIGVTRTLSVTEDFDWTDEKRRAFLITYANTADMKQSLRSVGATNVQFHKELNSNGEFQKDFDDAAQVARAVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKVDLNVKQNLSLDQAHAQL
Ga0311370_104708592F048424GGTGGMMLTEELEEVGKRTRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISEGPPVLSADGRVMQFAKSKLSGKTLWFEDGDETGAIIPMQVKPGDVIEFSFRNITLVDFDKCGFPGIGHLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGSEDWHRA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.