NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268243_1000325

Scaffold Ga0268243_1000325


Overview

Basic Information
Taxon OID3300030510 Open in IMG/M
Scaffold IDGa0268243_1000325 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7485
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004321Metagenome / Metatranscriptome443Y
F056883Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0268243_100032517F004321N/AVNISLHELSSERQWFVVDPSARETFTPRELTDAYKHFEEREPAICERRYGLKASAYQFGERVLLVYEESETGVVILTHPRS
Ga0268243_10003253F056883AGGAGVSDTADTPFPPEEICAQAQGNAAAWILTIIAYLKERGLSVEDCVAFHGHSFAPAWEELRGRPVEEVAQLVALNALSVGNALRSLSSEDGRAELLVEGWPDEDLMSLLPLDRDDCDQIWNTYKPIMEHLGLGYAWQRQDDGVRITVELQSGR
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