NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268243_1074899

Scaffold Ga0268243_1074899


Overview

Basic Information
Taxon OID3300030510 Open in IMG/M
Scaffold IDGa0268243_1074899 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)762
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004047Metagenome / Metatranscriptome455Y
F009317Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0268243_10748991F009317GGAMTPEQARTGMLVRVMEHHRVQERRGLLGKVVARYGGEDCVAVNVRLADGECRLFWPRDLGEISPSSPQAWWRFLSWPRIHRQFIGSC
Ga0268243_10748992F004047N/AGTVEQSFREESLQEDQSVSEMAQEVLMRQAKALAHRSGHSLEDACRAVSDTQAGRQLRDLANGEHRHEKARHWQASVFWNRAEERLMHQIGSESLSRFAAERHYSWVESYIERLEGKEERAR
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