NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268241_10001241

Scaffold Ga0268241_10001241


Overview

Basic Information
Taxon OID3300030511 Open in IMG/M
Scaffold IDGa0268241_10001241 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4507
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Amatitan, Jalisco
CoordinatesLat. (o)21.053Long. (o)-103.902Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000288Metagenome / Metatranscriptome1369Y
F032402Metagenome180Y
F035910Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0268241_100012411F032402GAGMTPQVVICPHCKKPFDGELLAEGSRHEGFKCPHCRLFVPAKRANGAGDQAS
Ga0268241_100012412F035910GAGMGEDSHTLRVHSEYSISAAMRLDPNTHALVMATAFVTSICFAVAAMSVIGLTIHLFVPGA
Ga0268241_100012417F000288AGGAGGMALARVVSFEGVSKDRMDEMSREIEQGERPADIPASEIVVLHDPDADKSLVVLFFENEDDYRRGDETLNAMPASDTPGQRTSVAKYNVAMRMRD
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