Scaffold Ga0268241_10048240

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268241_10048240

Scaffold Ga0268241_10048240

Overview

Basic Information
Taxon OID	3300030511 Open in IMG/M
Scaffold ID	Ga0268241_10048240 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	908
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Mexico: Amatitan, Jalisco
Coordinates	Lat. (^o)	21.053	Long. (^o)	-103.902	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048522	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0268241_100482402	F048522	AGGAG	VKKSLKLSVGSVIVAGALGAVLLPATGASAADAFVCPSGTDTIQVPYEWTGNTPDLAGTVCVRAGTTLFATMNVTPGWQAQLKSDGSDGRTDVRFSQPTTSDRVELRYEAGRTEIK

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