NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268255_10047612

Scaffold Ga0268255_10047612


Overview

Basic Information
Taxon OID3300030516 Open in IMG/M
Scaffold IDGa0268255_10047612 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1390
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.0936Long. (o)-100.2988Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057183Metagenome136N
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0268255_100476123F064462GGAGGMPADLAAIAILVLAALTAPLAADGRRRLATRRFDASYERNLLRRTGRG
Ga0268255_100476124F057183N/AQGLAAPPFGSAFVWLAEGEGAAGRWFARVSGLPGRGSLIRFGRPGVPAFQLAAADPEAAPALPSSLEPALRELCEGLGWSVVRLVEDALPALDPVRRRVPGADDEGAFLAWAYTLAVDEAIDRLSARGLLTQPPAAVAALRVTDPALAGAAL

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