NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311372_10478915

Scaffold Ga0311372_10478915


Overview

Basic Information
Taxon OID3300030520 Open in IMG/M
Scaffold IDGa0311372_10478915 Open in IMG/M
Source Dataset NameIII_Palsa_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040189Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0311372_104789154F040189AGGAGMAIVPLNYAPPAYTTTNVLYGVGIMFTAPPGTAVPGDAYLGYGSSWTGLGWSYTGGTLDGVTLTFAPTTQNILIEEQPTPVGVAVSTADLTLTCNLSEETLNNVSLAWGNSGTQAVTAAGASQPGKTVLTLSTVFPSLSVALIGKNQSGYARVLYIPTVVSAGQVQTAYRRAAQQRVYPLTLSAICPFNSITWSDLTALATS

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