Basic Information | |
---|---|
Taxon OID | 3300030521 Open in IMG/M |
Scaffold ID | Ga0307511_10000037 Open in IMG/M |
Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 103008 |
Total Scaffold Genes | 100 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 83 (83.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 45.5468 | Long. (o) | -122.376 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F044005 | Metagenome / Metatranscriptome | 155 | Y |
F047908 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307511_1000003787 | F044005 | N/A | MDDATPVESASTKKPVALIVALVLAILAAAGAGAYAQWLTQERAHLQTQLVSQERKVLDLREQLTRAEVAVQEKDAALASREVALADATQPELPVRVSFRPAWMGQGMVASFRNVGSQQLTLMVEFRDPNLRSSRDFAIVVEAGATAEVGHPQGWLVNSGQSVRVSASGFKSVTAFAP |
Ga0307511_1000003789 | F047908 | AGGAGG | MELEDALNLGLPPHHVTPCKGAEGAAFRAEVVGYPQCTGFGATADEAVRVARHLYTQLRDGQAAVAVSEMEQDNAERLREAMRYVVTRALV |
⦗Top⦘ |