NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307511_10000037

Scaffold Ga0307511_10000037


Overview

Basic Information
Taxon OID3300030521 Open in IMG/M
Scaffold IDGa0307511_10000037 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103008
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (83.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.5468Long. (o)-122.376Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044005Metagenome / Metatranscriptome155Y
F047908Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0307511_1000003787F044005N/AMDDATPVESASTKKPVALIVALVLAILAAAGAGAYAQWLTQERAHLQTQLVSQERKVLDLREQLTRAEVAVQEKDAALASREVALADATQPELPVRVSFRPAWMGQGMVASFRNVGSQQLTLMVEFRDPNLRSSRDFAIVVEAGATAEVGHPQGWLVNSGQSVRVSASGFKSVTAFAP
Ga0307511_1000003789F047908AGGAGGMELEDALNLGLPPHHVTPCKGAEGAAFRAEVVGYPQCTGFGATADEAVRVARHLYTQLRDGQAAVAVSEMEQDNAERLREAMRYVVTRALV
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