NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307511_10014505

Scaffold Ga0307511_10014505


Overview

Basic Information
Taxon OID3300030521 Open in IMG/M
Scaffold IDGa0307511_10014505 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7669
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.5468Long. (o)-122.376Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000814Metagenome880Y
F016902Metagenome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0307511_100145051F016902N/ANRDSVFIKGLSVKSSLFPQKMLALAVQLGFLDDFLGPRVLVFVNGF
Ga0307511_1001450510F000814N/AMKISPSTVELGFENDYWDSRDSVFINGLSVRSSLFKQKMSASAIELGFVDDFVGPRVLVFVNGF
Ga0307511_1001450512F000814N/AMKISTSAIELGFEDDYWDSRDSVFINGLSVRSIVTAHKMSASDVELGFLNDFWGPGTKFSSTVS
Ga0307511_100145052F000814N/AMKISASAIELGFEDDYWDTRDSVFIKGLSVKSSLFPQKMLALAVQLGFLDDFLGPRVLVFVNGF
Ga0307511_100145053F000814AGTAGVKISASAVELVLKDDFWDSRDSVFIKGLSVMSSLFSQKMSASAVELDFLDDFLGPGVLVFVNGF
Ga0307511_100145055F000814N/AMKISASAVVLRFEDELWDTRDSVFVNGLSVSSSIFAQKMSMSAVELGFFDDFLGPRVLIFVNSF
Ga0307511_100145056F000814N/AMNISASAIELGFEDDYWDSRDSVFIKGLSVKSSLFPQKMLASAVQLGFLDDFLGPRVLVFVKGF
Ga0307511_100145057F000814AGTAGVKISASAVELVFKDDFWDSRDSVFINGLSVRSSLFSQKMSSSAVELGFLDDFLGPGVLVFVNGF
Ga0307511_100145058F000814N/AMKISTSAIELGFEDDFCHSRDHVFINGLSVRSIFFAQKMSASAVELGFFDDFLGPRT
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Institute for Fundamental Biomedical Research
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