NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307511_10067195

Scaffold Ga0307511_10067195


Overview

Basic Information
Taxon OID3300030521 Open in IMG/M
Scaffold IDGa0307511_10067195 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2662
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.5468Long. (o)-122.376Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000814Metagenome880Y

Sequences

Protein IDFamilyRBSSequence
Ga0307511_100671951F000814AGTAGMKISASAVELGFEDDLWDSRDLVFINGLSVRSSLFAQKMSASVVELGFLDNFLGLRVLVIDNGF
Ga0307511_100671952F000814AGGAGMKISASAVELGFEVDFWDKRDLVFINSLSVRSSAFAQKMSASAVELGFLDIFWVRGS
Ga0307511_100671953F000814AGTAGVKISALAVELGFEDDFWDCRDLVFVNGLAVRSSLGAQKMSASAVELGFLDDFWVPGS
Ga0307511_100671954F000814AGGAGVYIEDFCVTIEQGFEDNFWDSRDSVFINGLSVRSSLFAQKMSASAVELGFLDDFLGQRVLVFVNGF
Ga0307511_100671955F000814N/ALGFLDDFWDRRDSVFINGLSVRSSVCEQKMSASAVELGFLDNILGPRVLVFINGF
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