NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10000155

Scaffold Ga0307512_10000155


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10000155 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90937
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (41.58%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026456Metagenome197Y
F047400Metagenome149Y
F048690Metagenome147Y
F059517Metagenome133Y
F079403Metagenome115Y
F089625Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000015512F059517AGGAGMLKQQPMLDITRSNRYHVRPQVNTVESHFIPSATDNMAELYDLHHFESNTEHLEFIDSLLADNKNLFPLAEHVEGGVCGPNPMQRVSKAANE
Ga0307512_1000015513F047400GGAMNAFVLLPLQESMAQRGAGKHDQWRGYMTVLVVNHGSIESISIPSAGIHPMIKFDVDKQRDCFCQEVKWMLAIR
Ga0307512_1000015540F079403N/AMRPQNQCDGMHPDTMIKDFRALLDNMQDATHRTAIYSGMLECIKHKSHNMTYILDEQLPAMELCIYHGIKVQVEGLEGECISQMCRCSQSQSWCGGVRRNDWVWVKPSLGWCYSTLNGRLLWQLHRLFKIWLLNEDGAFVEYCVALAVTTIPENSRNLDPVMIFVPVRNALAASALHVFSVGNIVGCVHVIPEIATSSMTGDGSNKXWIVNSQINLATWNDVYYE
Ga0307512_1000015584F089625GAGMIIPLGFAAGPSLNHAERQPMKSNEDENNYRRQQMMNGQYITMSVNGASTICGVVSTVIH
Ga0307512_1000015586F026456N/AMFDHMDGVMRALAKKKTQWQEDLFLAVKLAPQKLSKYYAEVIPTTGMLLISAHILDPFQNLRSFRKWDKGMDINLEDETSYTKQYQEAFLKYGENE
Ga0307512_1000015591F048690GAGMLQVTDNMEASCVFYVKVGTFTHLEQSKISLLTVNKSGIVTLTIQHDMIVSVIFMQYPRDYLRQTSADVLTLEEHPINI

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