NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10002821

Scaffold Ga0307512_10002821


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10002821 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21163
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (34.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042672Metagenome157Y
F047400Metagenome149Y
F079540Metagenome115Y
F086388Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_1000282125F086388N/AMKNGDKTAERLEMAAVKEGNHTHAAVDIDWRISQIDCLCRWQAVYHYPVSLNCRHGAVVSQVGHPVEPYSLRLVEIPSSTWSVNKDGGELL
Ga0307512_1000282133F079540N/AVCRSIKLISLRDVSEDFRIPNFGQLFRTQIEEDWGHEVSGLLLGYNQNVLLDSIFIKLQNGLSYYCQPFHCPTSVERLGLDCKVEYTNANQGIMPESHKIWVQYTESDLDNTFQGRVPSFPVLLFSWTPPNQILQFQEYPAARNAISTSSKRCKKTQQWILRPHIQEYAVVIPTKYKDPHGWADCVDGFIQVVKQTDMMHIVPVGAIVGPAHLVRENAASDRINSVWLVTNHVDLDTY
Ga0307512_1000282134F047400GGAMNTFVLLPLQESIAQHSACEHDQWQRYMTVLVINYGIIKSISILTAVIHPMIKIDVDKPRECFRQEVK
Ga0307512_100028217F042672N/AVVIPTTLEDVHGWADCVDGLILVVKQTDKMHIVPVGAIVGPAHLVRENDAASDRIDSVWLVNNHVDLDTYWTVY
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