NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307512_10019871

Scaffold Ga0307512_10019871


Overview

Basic Information
Taxon OID3300030522 Open in IMG/M
Scaffold IDGa0307512_10019871 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6102
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.6996Long. (o)-121.669Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008227Metagenome336Y
F019765Metagenome227Y
F081952Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307512_100198714F008227N/AMDTQPPPAGESGSNTGRLAGATSNTDILGTQQEPRHKFVHRDAANAATKHMTQDAHLKIVRKTGRRKNKKQHAVGCEYIHIEAQGRQLTE
Ga0307512_100198715F019765GAGMLQVMDNMDASCVFYVKVGTFTHLEQRKISLLTVRKSGIVTLTVQHDMIVSVIIM
Ga0307512_100198716F081952N/AMMVNAPKKNFSPLPAGRSGKSTKQSTQRRHHANEGNSGLEAETVRALGAWCSLRSKKKLAAEKR
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