NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311357_10162574

Scaffold Ga0311357_10162574


Overview

Basic Information
Taxon OID3300030524 Open in IMG/M
Scaffold IDGa0311357_10162574 Open in IMG/M
Source Dataset NameII_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2202
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025825Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0311357_101625741F025825N/AMLRRKTIIVLVITLMVTAMVAAFSYLYISQILRMRIANANETASNLTHQLAYAVANAVPDFSSTSVDTSNSAAVRRALADYIQTDVALNNLLQSYTGDWRFVQDVMIVDVGGKALLHTNASMVGKVIAPRPNFQKVV

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