Scaffold Ga0257182_1065932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257182_1065932

Scaffold Ga0257182_1065932

Overview

Basic Information
Taxon OID	3300030611 Open in IMG/M
Scaffold ID	Ga0257182_1065932 Open in IMG/M
Source Dataset Name	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-1 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	966
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	45.7544	Long. (^o)	-113.9092	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083663	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257182_10659322	F083663	GGA	MKAVLLFVLLFAVLIFSQTPTKPVWPDQFLAVFGLNVNSSHIKNETSYFYSNWDIQAQLIDYRTQCIAFNDAATKTACKIWFLPAGAYISIPAQNLCCLWFPGVGAVPPDFLATFNYSGIIENAPDEYGVLHQSYKWLGDLDFLYWTEVKTGFDIAMRDGGGDTFWNFGTFTEGPQDPSLFQLPSTKCAAACPGSFRRDAVTLRKVRPFPV

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