NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257182_1089577

Scaffold Ga0257182_1089577


Overview

Basic Information
Taxon OID3300030611 Open in IMG/M
Scaffold IDGa0257182_1089577 Open in IMG/M
Source Dataset NameMetatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.7544Long. (o)-113.9092Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064333Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0257182_10895771F064333N/ARKRGGGQDERGCDERIGALVAAHVTPHLGKIVGVIKSPMHEAFNDALGLFDEKITKWKPEPDFEKSFRELDYFSRSYWQLYPALKKVDDMYEPLWALREVFSDIYPWQLIWKGHDAVYRHIDNAVYTWEQTILKDRNAELAEPIKRDVILKYRHDTDIAVLRYYNKIMRTIVMPPFEAAVHPVAKHIIDPLADSIPEPLREFIDIKQMFEDLYTGIVTDSINVVLRSDRPDEAAAVAN
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