NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311356_10400881

Scaffold Ga0311356_10400881


Overview

Basic Information
Taxon OID3300030617 Open in IMG/M
Scaffold IDGa0311356_10400881 Open in IMG/M
Source Dataset NameII_Palsa_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1354
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005459Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
Ga0311356_104008811F005459N/ATDSGKPQQAVQKEFGLRVRSGLSLDWGKPAHVNGSRIEGSVLVSNVSPDDMDLTFVVMAVAGNGRATAIGYQHFVLPRGTHAMELPFGENLPFGGYIVHVDVVGEVEAKNVIYREKMDTPHQLHVTVGP
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