NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268386_10032769

Scaffold Ga0268386_10032769


Overview

Basic Information
Taxon OID3300030619 Open in IMG/M
Scaffold IDGa0268386_10032769 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4113
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004532Metagenome / Metatranscriptome434Y
F020514Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0268386_100327694F004532AGGCGGMGEDQYTSHATFEVKRTGGPDWTAPQGAGPTTGGQVMEKMHFWDDGPDDHTVVERDYDSLVGVAGLRRGEPGSAIRKLRAFDHFTAIVGKGREDAGTQALMESASMRIRTYNMQDEQFAFHRALRSEEVRIQFRGDALDMSEFENVEVSPGEVTIIPLGISHSVISIPPEDENFLRLNFYSKIRWRVPIDSTKHLFYSKFEITTTVHKRAEWRKKLATG
Ga0268386_100327695F020514GAGGMFRRPETKAAEEKVYKQKQIGEFMTTWKDFPRPGLAAWAERKKAGLMGTAKSTHYTPRFRPFDMLGVPNQSLVILENENHRIGAESVVGIQDCFHRHVDCDMIYFQFCGNTTVETEFGVYEMEPGEVMLIPGGISHRSIGRNDSLRYFAKVTRRWTT
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