NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268386_10382659

Scaffold Ga0268386_10382659


Overview

Basic Information
Taxon OID3300030619 Open in IMG/M
Scaffold IDGa0268386_10382659 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003507Metagenome / Metatranscriptome482Y
F042786Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0268386_103826591F003507N/AQVDGSQAHVVLPEVLAQFRRRLDEPLMAELLAIQAATAMEDGLVSPAHLVVDTCPSEQGSPRVNDAATR
Ga0268386_103826592F042786GGAMRRFGRQCRGMGKVLVTLVRQTERHLLEMGAQVLPLARAAQAHLHGTTHLSEDQQARLNTQLTAALEAHHRIAQQSRRLTQGKALSHCKMVNAYDPTVAPICQGKTNCAAQFGRKPGLIAEPAAGFICAWHLPMGHPSDASDVELWVDKVEQAMARVTTRPIPVIHSLAGDLALHDAALRETLHERGVLTVGIPRTVEPLPPSPMPEDVLRSLEEAELDHIRT
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